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Access to transfac flatfiles?

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Dear colleagues,
I was wondering if anyone on campus has a Transfac account and access to flatfiles that I could maybe use.
Best,
Falko
asked Dec 11, 2014 in Bioinformatics by falko.hofmann (400 points)

1 Answer

+2 votes
 
Best answer
Dear Falko,

There are public, although a bit outdated, versions available: ftp://ftp.ebi.edu.au/pub/databases/transfac/tfdoc32.txt

But I would suggest these databases: http://ebi.edu.au/ftp/software/MEME/Databases/motifs/motif_databases.12.2.tgz

They include JASPAR and other databases, and is quite up to date.

For the current up to date version of  Transfac you need a license, as you know. The Bioinformatics group at the IMP has such a license, please contact Alex Schleiffer @ IMP for a collaboration request.

Hope that helps,

Kind regards,

Markus
answered Jan 16, 2015 by Markus.Jaritz (540 points)
selected Jan 16, 2015 by falko.hofmann
Thank you for your response!
The commercial Transfac sadly includes some data that JASPAR or other databases do not provide.
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