AWK and BASH scripting

This course is currently being developed and will be offered at a later date.

This course introduces scripting with AWK and BASH. It is aimed at colleagues who are going to run analysis programs on their own or wish to use computing clusters.

Topics

Out of scope

This course focuses on the basics of using the UNIX command line. This course will not teach you statistics or bioinformatics.

Prerequisites

If you have attended these courses, then you will profit more from this training:

The ability to type with a low error rate is necessary, because this is a hands-on training.

Windows software

If you bring a Windows laptop to the training, please install the following programs:

Mac software

If you bring a Mac laptop to the training, please install the following program:

Practical information

Number of participants: minimum 5, maximum 10.

Length: The course takes one half-day, usually from 09:00 to 13:00.